Escherichia coli 042

Sanger Institute

Genome Size: 5.31 megabases, Released Date: 2010-01-28 #18590

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
FN554766
5.0 MB
4886 CDS

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plasmid p042 complete sequence
FN554767
110.7 KB
152 CDS

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References

Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042
Chaudhuri,R.R., Sebaihia,M., Hobman,J.L., Webber,M.A., Leyton,D.L., Goldberg,M.D., Cunningham,A.F., Scott-Tucker,A., Ferguson,P.R., Thomas,C.M., Frankel,G., Tang,C.M., Dudley,E.G., Roberts,I.S., Rasko,D.A., Pallen,M.J., Parkhill,J., Nataro,J.P., Thomson,N.R. and Henderson,I.R. PLoS ONE 5 (1), E8801 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Escherichia coli 042

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Sequences

References

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