Streptococcus pneumoniae ATCC 700669

Wellcome Trust Sanger Institute

Genome Size: 2.2 megabases, GC Content: 39.5%, Released Date: 2009-01-13 #17493

Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_011900
2.1 MB
1990 CDS

Table view
Circular View
Artemis Viewer

References

Role of conjugative elements in the evolution of the multidrug-resistant pandemic clone Streptococcus pneumoniaeSpain23F ST81
Croucher,N.J., Walker,D., Romero,P., Lennard,N., Paterson,G.K., Bason,N.C., Mitchell,A.M., Quail,M.A., Andrew,P.W., Parkhill,J., Bentley,S.D. and Mitchell,T.J. J. Bacteriol. 191 (5), 1480-1489 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Streptococcus pneumoniae ATCC 700669

Search Genome

Sequences

References

Related Genomes